Including a SMIET Runner + parity issues between JAX & NumPy

Here most consistency issues between JAX and NumPy are matched, and a general SMIET runner is now implemented for end users to have easier accessibility of the code. This fixes #30 and #17 .

Additionally, the file storage optimisation is included in the coreas_to_hdf5_origin.py (Fixes #31 ) and this reduces the overall memory overhead in the jax version (Fixes #23 )

Syntactic changes between jax and numpy

• load / save both in hdf5
• removed seralize/deserliaze in SlicedSynthesis in favour of assigning antenna parameters directly (np)
• slice_grammages -> grammages (np)
• antenna-specific objects -> antenna_information (jax)
• freq_ar load without units.MHz (jax)
• store zenith / azimuth instead of geometry in tempalte_information (np)
• match template_information (jax)
• long -> long_profile (np)
• removed explicit GH parameters as members, and opt to set GH parameters as a dictionary object (jax)
• made SlicedShower object inherited from CoreasShower and moved repeating methods to CoreasShower (jax)
• renamed antenna properties to antenna_array like in numpy (jax)
• bandpass filter the traces on initialization for all shower objects (numpy & jax), since we anyways only work within that bandwidth
• included compression for heavy arrays when saving templates (numpy & jax)
• moved transformer object to base_shower, like in numpy (jax)
• call functions for antenna position match with numpy (jax)
• magnetic_field_vector -> magnet (jax)
• long_profile before returned both grammages & profile, now only returns profile and grammages set separately (numpy)
• GH_parmaeters now saved as dictionary, containing all parameters as well as L and R (numpy & jax)
• removed geometry, opting for zenith and azimuth as private members instead
• adding antenna labels from reconstructing starshape to have a geometry-independent way to get the function
• moved the transform_profile_to_origin to base shower

SMIET Runner

• verified generation with user-defined target showers
• verified generation with coreas showers
• verify the jax implementation
• include function to extract synthesised traces from slices