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Pranav Sampathkumar
corsika
Commits
d0bae245
Commit
d0bae245
authored
4 years ago
by
Maximilian Reininghaus
Browse files
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even better flow bin handling
parent
cc183aac
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Changes
3
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3 changed files
Framework/Utilities/SaveBoostHistogram.hpp
+24
-19
24 additions, 19 deletions
Framework/Utilities/SaveBoostHistogram.hpp
Framework/Utilities/testSaveBoostHistogram.cc
+10
-5
10 additions, 5 deletions
Framework/Utilities/testSaveBoostHistogram.cc
Tools/read_hist.py
+6
-4
6 additions, 4 deletions
Tools/read_hist.py
with
40 additions
and
28 deletions
Framework/Utilities/SaveBoostHistogram.hpp
+
24
−
19
View file @
d0bae245
...
@@ -23,30 +23,34 @@ namespace corsika {
...
@@ -23,30 +23,34 @@ namespace corsika {
void
save_hist
(
boost
::
histogram
::
histogram
<
Axes
,
Storage
>
const
&
h
,
void
save_hist
(
boost
::
histogram
::
histogram
<
Axes
,
Storage
>
const
&
h
,
std
::
string
const
&
filename
)
{
std
::
string
const
&
filename
)
{
int
const
rank
=
h
.
rank
();
int
const
rank
=
h
.
rank
();
int
const
size
=
h
.
size
();
using
value_type
=
typename
boost
::
histogram
::
histogram
<
Axes
,
Storage
>::
value_type
;
std
::
vector
<
size_t
>
axes_dims
;
std
::
vector
<
size_t
>
axes_dims
;
axes_dims
.
reserve
(
rank
);
axes_dims
.
reserve
(
rank
);
auto
overflow
=
std
::
make_unique
<
bool
[]
>
(
rank
);
auto
underflow
=
std
::
make_unique
<
bool
[]
>
(
rank
);
std
::
vector
<
char
>
axis_types
;
std
::
vector
<
char
>
axis_types
;
axis_types
.
reserve
(
rank
);
axis_types
.
reserve
(
rank
);
for
(
int
i
=
0
;
i
<
rank
;
++
i
)
{
for
(
int
i
=
0
;
i
<
rank
;
++
i
)
{
auto
const
&
ax
=
h
.
axis
(
i
);
auto
const
&
ax
=
h
.
axis
(
i
);
int
const
has_underflow
=
(
ax
.
options
()
&
0x01
)
?
1
:
0
;
unsigned
const
has_underflow
=
(
ax
.
options
()
&
0x01
)
?
1
:
0
;
int
const
has_overflow
=
(
ax
.
options
()
&
0x02
)
?
1
:
0
;
unsigned
const
has_overflow
=
(
ax
.
options
()
&
0x02
)
?
1
:
0
;
underflow
[
i
]
=
has_underflow
;
overflow
[
i
]
=
has_overflow
;
axes_dims
.
emplace_back
(
ax
.
size
()
+
has_underflow
+
has_overflow
);
axes_dims
.
emplace_back
(
ax
.
size
()
+
has_underflow
+
has_overflow
);
if
(
ax
.
continuous
())
{
if
(
ax
.
continuous
())
{
axis_types
.
push_back
(
'c'
);
axis_types
.
push_back
(
'c'
);
std
::
vector
<
double
>
ax_edges
;
std
::
vector
<
double
>
ax_edges
;
ax_edges
.
reserve
(
ax
.
size
());
ax_edges
.
reserve
(
ax
.
size
()
+
1
);
for
(
int
j
=
0
;
j
<
ax
.
size
();
++
j
)
{
ax_edges
.
push_back
(
ax
.
bin
(
j
).
lower
());
}
for
(
int
j
=
0
;
j
<
ax
.
size
()
+
has_overflow
;
++
j
)
{
ax_edges
.
push_back
(
ax
.
bin
(
ax
.
size
()
-
1
).
upper
());
ax_edges
.
push_back
(
ax
.
bin
(
j
).
lower
());
}
cnpy
::
npz_save
(
filename
,
std
::
string
{
"binedges_"
}
+
std
::
to_string
(
i
),
cnpy
::
npz_save
(
filename
,
std
::
string
{
"binedges_"
}
+
std
::
to_string
(
i
),
ax_edges
.
data
(),
{
ax_edges
.
size
()},
"a"
);
ax_edges
.
data
(),
{
ax_edges
.
size
()},
"a"
);
...
@@ -63,29 +67,30 @@ namespace corsika {
...
@@ -63,29 +67,30 @@ namespace corsika {
cnpy
::
npz_save
(
filename
,
std
::
string
{
"axistypes"
},
axis_types
.
data
(),
cnpy
::
npz_save
(
filename
,
std
::
string
{
"axistypes"
},
axis_types
.
data
(),
{
axis_types
.
size
()},
"a"
);
{
axis_types
.
size
()},
"a"
);
cnpy
::
npz_save
(
filename
,
std
::
string
{
"overflow"
},
overflow
.
get
(),
{
axis_types
.
size
()},
"a"
);
cnpy
::
npz_save
(
filename
,
std
::
string
{
"underflow"
},
underflow
.
get
(),
{
axis_types
.
size
()},
"a"
);
}
}
auto
const
prod_axis_size
=
auto
const
prod_axis_size
=
std
::
accumulate
(
axes_dims
.
cbegin
(),
axes_dims
.
cend
(),
std
::
accumulate
(
axes_dims
.
cbegin
(),
axes_dims
.
cend
(),
1
,
std
::
multiplies
<>
());
unsigned
{
1
}
,
std
::
multiplies
<>
());
auto
temp
=
std
::
make_unique
<
value_type
[]
>
(
prod_axis_size
);
auto
temp
=
std
::
make_unique
<
float
[]
>
(
prod_axis_size
);
std
::
cout
<<
"rank = "
<<
rank
<<
std
::
endl
;
assert
(
prod_axis_size
==
h
.
size
());
std
::
cout
<<
"size = "
<<
size
<<
std
::
endl
;
std
::
cout
<<
"prod_axis_size = "
<<
prod_axis_size
<<
std
::
endl
;
// reduce multi-dim. to 1-dim, row-major (i.e., last axis index is contiguous in
// reduce multi-dim. to 1-dim, row-major (i.e., last axis index is contiguous in
// memory) take special care of underflow bins
,
which have -1 as index and thus need
// memory) take special care of underflow bins which have -1 as index and thus need
// to be shifted by +1
// to be shifted by +1
for
(
auto
&&
x
:
indexed
(
h
,
boost
::
histogram
::
coverage
::
all
))
{
for
(
auto
&&
x
:
indexed
(
h
,
boost
::
histogram
::
coverage
::
all
))
{
int
const
offset_underflow
=
(
h
.
axis
(
0
).
options
()
&
0x01
)
?
1
:
0
;
int
p
=
0
;
auto
p
=
x
.
index
(
0
)
+
offset_underflow
;
// 1-d-index
for
(
int
axis_index
=
1
;
axis_index
<
rank
;
++
axis_index
)
{
for
(
int
axis_index
=
0
;
axis_index
<
rank
;
++
axis_index
)
{
int
const
offset_underflow
=
(
h
.
axis
(
axis_index
).
options
()
&
0x01
)
?
1
:
0
;
int
const
offset_underflow
=
(
h
.
axis
(
axis_index
).
options
()
&
0x01
)
?
1
:
0
;
auto
k
=
x
.
index
(
axis_index
)
+
offset_underflow
;
auto
k
=
x
.
index
(
axis_index
)
+
offset_underflow
;
p
=
k
+
p
*
axes_dims
.
at
(
axis_index
);
p
=
k
+
p
*
axes_dims
.
at
(
axis_index
);
std
::
cout
<<
" "
<<
x
.
index
(
axis_index
);
}
}
temp
[
p
]
=
*
x
;
temp
[
p
]
=
*
x
;
...
...
This diff is collapsed.
Click to expand it.
Framework/Utilities/testSaveBoostHistogram.cc
+
10
−
5
View file @
d0bae245
...
@@ -11,23 +11,28 @@
...
@@ -11,23 +11,28 @@
#include
<random>
#include
<random>
namespace
bh
=
boost
::
histogram
;
TEST_CASE
(
"SaveHistogram"
)
{
TEST_CASE
(
"SaveHistogram"
)
{
std
::
mt19937
rng
;
std
::
mt19937
rng
;
std
::
normal_distribution
n1
{
2.
,
6.
};
std
::
normal_distribution
n1
{
2.
,
6.
};
std
::
exponential_distribution
e
{
1.
};
std
::
exponential_distribution
e
{
1.
};
std
::
uniform_int_distribution
u
{
1
,
10
};
std
::
uniform_int_distribution
u
{
1
,
10
};
std
::
uniform_real_distribution
<
double
>
r
{
-
3
,
3
};
auto
h
=
auto
h
=
bh
::
make_histogram
(
boost
::
histogram
::
make_histogram
(
boost
::
histogram
::
axis
::
regular
{
5
,
0
,
10
,
"x"
},
bh
::
axis
::
regular
{
5
,
0
,
10
,
"normal"
},
bh
::
axis
::
regular
{
3
,
0
,
4
,
"exponential"
},
boost
::
histogram
::
axis
::
regular
{
3
,
0
,
4
,
"y"
},
bh
::
axis
::
category
<
int
>
{{
2
,
3
,
5
,
7
},
"integer category"
},
boost
::
histogram
::
axis
::
category
{
1
,
4
,
8
});
bh
::
axis
::
regular
<
double
,
bh
::
use_default
,
bh
::
use_default
,
bh
::
axis
::
option
::
growth_t
>
{
10
,
-
1
,
1
,
"integer category"
});
for
(
int
i
{
0
};
i
<
100'000
;
++
i
)
{
for
(
int
i
{
0
};
i
<
100'000
;
++
i
)
{
auto
const
a
=
n1
(
rng
);
auto
const
a
=
n1
(
rng
);
auto
const
b
=
e
(
rng
);
auto
const
b
=
e
(
rng
);
auto
const
c
=
u
(
rng
);
auto
const
c
=
u
(
rng
);
auto
const
d
=
r
(
rng
);
h
(
a
,
b
,
c
);
h
(
a
,
b
,
c
,
d
);
}
}
corsika
::
utl
::
save_hist
(
h
,
"hist.npz"
);
corsika
::
utl
::
save_hist
(
h
,
"hist.npz"
);
...
...
This diff is collapsed.
Click to expand it.
Tools/read_hist.py
+
6
−
4
View file @
d0bae245
...
@@ -11,14 +11,16 @@ def read_hist(filename):
...
@@ -11,14 +11,16 @@ def read_hist(filename):
"""
"""
d
=
np
.
load
(
filename
)
d
=
np
.
load
(
filename
)
axistypes
=
d
[
'
axistypes
'
].
view
(
'
c
'
)
axistypes
=
d
[
'
axistypes
'
].
view
(
'
c
'
)
overflow
=
d
[
'
overflow
'
]
underflow
=
d
[
'
underflow
'
]
axes
=
[]
axes
=
[]
for
i
,
at
in
enumerate
(
axistypes
):
for
i
,
(
at
,
has_overflow
,
has_underflow
)
in
enumerate
(
zip
(
axistypes
,
overflow
,
underflow
)
):
if
at
==
b
'
c
'
:
if
at
==
b
'
c
'
:
axes
.
append
(
bh
.
axis
.
Variable
(
d
[
f
'
binedges_
{
i
}
'
],
overflow
=
True
,
underflow
=
True
))
axes
.
append
(
bh
.
axis
.
Variable
(
d
[
f
'
binedges_
{
i
}
'
],
overflow
=
has_overflow
,
underflow
=
has_underflow
))
elif
at
==
b
'
d
'
:
elif
at
==
b
'
d
'
:
axes
.
append
(
bh
.
axis
.
IntCategory
(
d
[
f
'
bin
edge
s_
{
i
}
'
]))
axes
.
append
(
bh
.
axis
.
IntCategory
(
d
[
f
'
bins_
{
i
}
'
]
,
growth
=
(
not
has_overflow
)
))
h
=
bh
.
Histogram
(
*
axes
)
h
=
bh
.
Histogram
(
*
axes
)
h
.
view
(
flow
=
True
)[:]
=
d
[
'
data
'
]
h
.
view
(
flow
=
True
)[:]
=
d
[
'
data
'
]
...
...
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